The Arias Lab

● Arias T., Chaux-Varela J., Correa M., Zuluaga A., Perez-Escobar, OA., Perdomo O., Trujillo E., Valencia J., Checklist de las Orquídeas (Orchidaceae) del departamento de Caquetá, Colombia. PhytoKeys - Preprint
● Arcila J. E., E. Marín, M. Ortega-Cuadros, J. M. Muñoz-Perez, T. Arias. 2022. A metagenomic assessment of soil microbial communities in a coal mine spoil- dump under reclaimed vegetation in La Guajira Colombia. Journal of Soil Sciences and Plant Nutrition. 20 Oct. https://doi.org/10.1007/s42729-022-01036-y
● Ortega-Cuadros, M., Chir, L., Aligon, S., Arias, T., Verdier, J. Grappin, P. 2022. Dual-transcriptomic datasets evaluating the effect of the necrotrophic fungus Alternaria brassicicola on Arabidopsis germinating seed. Data in Brief.
● Ortega-Cuadros, Tiago M., De Souza L., Berruyer R., Aligon S., Pelletier S., Renou J.-P., Arias T., Campion C., Guillemette T., Verdier J., Grappin. 2022. Seed transmission of pathogens. Non-canonical immune response in Arabidopsis germinating seeds compared to early seedlings against the necrotrophic fungus Alternaria brassicicola. Plants 11, 1708
● Muñoz-Perez, J. M., et al. , T. Arias. 2022. Genome-wide diversity of northern South America cultivated Coconut (Cocus nucifera L.) uncovers diversification times and targets of domestication of coconut globally. Scientific reports. 12:2958.
● Perez-Escobar, O.A., Dodsworth S., Bogarín D., Sidonie B., Balbuena J. A., Schley R., Kikuchi I., Morris S. K., Epitawalage N., Cowan R., Maurin O., Zuntini A., Arias T., Serna A., Gravendeel B., Torres M. F., Nargar K., Chomicki N., Cowan R., Chase M. C., Leitch I. J., Forest F. ; William J. Baker. 2021. Hundreds of nuclear and plastid loci yield insights into orchid relationships. Hundreds of nuclear and plastid loci yield insights into orchid relationships. American Journal of Botany. Special issue108(7): 1–15.
● Serna-Sánchez, M. A., Pérez-Escobar, O. A., Bogarín D., Torres M.F., Alvarez-Yela A. C., Arcila J. E Hall C. F., de Barros F., Pinheiro F., Dodsworth S., Chase M. W, Antonelli A., Arias T. 2021. Plastid phylogenomics resolves ambiguous relationships within the orchid family and provides a solid timeframe for biogeography and macroevolution. Scientific Reports 11:6858. https://doi.org/10.1038/s41598-021-83664-5
● Arcila, JE, R. Arango, J. Torres, T. Arias. 2021.. Special Issue: Molecular Phylogenetics and Mitochondrial Evolution”. Revisiting the origin of the Sigatoka disease complex using fossil calibrated phylogenies: mitochondrial genomes suggest later diversification times and pathogen host-tracking evolution. Life 11, 215 https://doi.org/10.3390/life11030215
● Arias, T., Niederhuth, C., McSteen, P. and Pires, J. C., 2021. The molecular basis of Kale domestication: Transcription profiling of leaves and meristems provides new insights into the evolution of a Brassica oleracea vegetative morphotype. Frontiers in Plant Sciences: Research Topic "#ArtGenetics - Looking at Art to Trace Plant Evolution". Vol. 12, Article: 637115.
● Arias, T. D. M. Riaño-Pachon, V. S. Di Stilio. 2021. Facilitating candidate gene discovery in an emerging model plant lineage: Transcriptomic and genomic resources for Thalictrum (Ranunculaceae). Applications in Plant Sciences 9 (1):e11407. doi: 10.1002/aps3.11407
● Morales-Briones, D.F., T. Arias, V. Di Stilio, D. Tank. 2019. The Complete Plastome of Thalictrum thalictroides (Ranunculaceae) and Chloroplast Primers for Clade-Wide Phylogenetic Studies. Applications in Plant Sciences 7(10): e11294.
● Botero, K., T. Arias. 2018. Uso de las ciencias ómicas para el mejoramiento genético de cultivos. Revista de Ciencias Agricolas, Universidad de Nariño. Volumen 34(1):64-78.
● Zhi-Yan D., T. Arias, W. Meng, and M.-L. Chye. 2016. Plant acyl-CoA-binding proteins: an emerging family involved in plant development and stress responses. Progress in Lipids Research. 63:165–181 doi: 10.1016/j.plipres. 2016.06.002. IF:11.2
● Henriquez C L, T. Arias, J. C. Pires, T. B. Croat, B. A. Schaal. 2014. Phylogenomics of the plant family Araceae. Molecular Phylogenetics and Evolution. 75: 91-102. IF:4.0
● Arias T., M. Beilstein, M. Tang, M. R. McKain, J. C. Pires. 2014. Diversification times among Brassica crops suggest hybrid formation after twenty million years of divergence. American Journal of Botany 101:86-91. IF: 2.5
● Mayfield D., J. D Washburn, T. Arias, P. Edger, C. Pires, G. C. Conant. 2013. Watching the grin fade: How polyploidy can illuminate cell biology. Seminars in Cell and Developmental Biology 24: 320-331. IF: 5.9
● Arias T. and J. C. Pires. 2012. A fully resolved and dated chloroplast phylogeny of the brassica crops and wild relatives (Brassiceae: Brassicaceae): Novel clades and taxonomic implications. TAXON: 61 (5) • October 2012: 980–988. IF:2.4
● Arias T. and J. H. Williams. 2008. Embryology of Manekia naranjoana (Piperaceae) and the origin of tetrasporic, sixteen-nucleate female gametophytes in Piperales. American Journal of Botany 95(3): 1-16. IF: 3.1
● Arias T., R. Callejas & A. Bornstein. 2006. New Combinations in Manekia, an earlier name for Sarcorhachis (Piperaceae). Novon 16(2): 205-208. IF:0.2
● Arias T., 2003. Architectural analysis of Vismia baccifera (roots and shoots) and Vismia macrophylla (roots) Clusiaceae. Caldasia 26(2): 333-358. IF: 0.3

Ongoing contributions

● Saldarriaga, J. D., H. Arenas—Castro, I. Soto, T. Arias. Phylogenetic position, genetic variation and conservation status of Calliandra (Fabaceae) species from Colombia with emphasis in Calliandra medellinensis an enigmatic species from Antioquia
● Henriquez, C.L., J.K. Teisher, T. Arias, T.B. Croat, B.A. Schaal. Leaf Development in Araceae: A comparative approach to homology of the monocot and eudicot leaf blade

Other publications in popular journals or books

● Arias, T. and Mejía, L. E. 2022. Orquídeas Para La Paz: Making peace with nature through sustainable development and biodiversity awareness in Colombia. Orchids SEPTEMBER: 668-671.
● Mejía, L. E and T. Arias. 2021. Manual para el Cultivo Casero de Semillas de Orquídeas. Universidad de la Amazonia y la Sociedad Colombiana de Orquideología. Granted by Ministerio de Ciencia y Tecnología, Colombia.
● Mejía, L. E and T. Arias. 2021. Manual para el Cultivo de Orquídeas. Universidad de la Amazonia y la Sociedad Colombiana de Orquideología. Granted by Ministerio de Ciencia y Tecnología, Colombia.
● Mejía, L. E and T. Arias. 2021. Guía de Identificación de Orquídeas de La Reserva Natural Comunitaria Uruki, El Manantial. Universidad de la Amazonia y la Sociedad Colombiana de Orquideología. Granted by Ministerio de Ciencia y Tecnología, Colombia.
● Bouchardy, J. and Rose, P. 2021 The Book Global Biodiversity Festival: Arias, T. Perspectives to promote the conservation of Orchids, Pag. 19 ISBN: 978-2-8399-3283-7
● Mejía, L. E and T. Arias. 2021. Manual de Horticultura Elemental para Conservación. Design and production, Reserva Orquídeas de la Sociedad Colombiana de Orquideología. Granted by Van Thienhoven Foundation.
● Masters, S., T. Arias, N. Flanagan. 2020. Orchid Revolution in Colombia. The Orchid Review. December Issue: 232-239.
● Mejía, L. E. and T. Arias. 2020. La Reserva Orquídeas: Protecting the Cloud Forest of the Northern Colombian Andes. Orchids Vol. 89 No11: 962-969.
● T. Arias. 2019. Perspectivas globales sobre la conservación de orquídeas. Orquideología. 36 (1): 59-65.
● Serna, A., J. Arcila, T. Arias. 2018. ¿Por qué estudiar las orquídeas desde la biología molecular? Tres casos que le interesarían a cualquier orquideólogo. Orquideología. 35 (1): 120-133.
● Arias, T. 2017. Inventario preliminar de las orquídeas de la reserva biológica de la Sociedad Colombiana de Orquideología y perspectivas para el desarrollo de un programa de investigación enfocado a la conservación. Orquideologia. 34 (2): 235-246.
● Arias, T. 2017. Masdevallia hortensis Luer & R. Escobar. Orquideología. 34 (2):165.